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Young Modellers' Forum 2003

MGMS & RSC MMG

December 1st 2003, SOAS, London


Abstracts for presentations and posters are available.

Programme

9.00 - 9.40 Registration
9.40 - 9.50 Introductions
David Manallack (MGMS) and Steve Maginn (RSC MMG)
9.50 - 10.07 Analysis of transmembrane protein structure: Implications for the prediction of 3D structural models
Tina Eyre - University College London
10.07 - 10.24 Protein Ligand Database (PLD): Additional understanding of the nature and specificity of protein-ligand complexes
Dushy Puvanendrampillai - University of Cambridge
10.24 - 10.41 Classification of HLA molecules by GRID/GOLPE analysis
Pingping Guan - Edward Jenner Institute for Vaccine Research
10.41 - 10.58 Quantitative structure activity relationships of carbamate, organophosphate pesticides and sweetener molecules
Roger Robinson - University of Reading
10.58 - 11.15 Substrate binding conformation and catalysis in lysozyme
Anna Bowman - University of Bristol
11.15 - 11.32 Tetracycline-magnesium ion complexes: Structural chameleons?
Olaf Othersen - Universit� Erlangen-Nrnberg
11.32 - 11.49 DFT calculations on TtBP- a highly-distorted porphyrin with an unusual resonance Raman spectrum
Roma Oakes - Queen's University of Belfast
11.50 - 12.10 If required - Extraordinary general meeting of the MGMS
11.50 - 1.30 Lunch/Posters for all, MGMS members to follow after EGM
1.30 - 1.47 Molecular modelling of lysyl-tRNA synthetase: Simulations meet experiments
Salinthip Thipayang - Imperial College London
1.47 - 2.04 The computational investigation of conformational change
Adrian Wiley - University of Southampton
2.04 - 2.21 Modelling and simulation studies of GlyR-derived channel-forming peptides in membrane related environments
Jennifer Johnston - University of Oxford
2.21 - 2.38 Virtual high-throughput screening incorporating complete receptor flexibility
Daniel Warner - University of Nottingham
2.38 - 2.55 An investigation into the structure and mechanism of non-heme Iron(II) oxygenases
Michael Nagle - University of Oxford
2.55 - 3.20 Coffee break - posters
3.20 - 3.37 The prioritisation of hydrophobic sitepoints within the binding pocket
Matt Kelly - University of Cambridge
3.37 - 3.54 A structural hierarchy for virtual library screening and as a tool for data analysis
Shane Weaver - University of Leeds
3.54 - 4.30 Have I got QSAR for you, hosted by Steve Maggin
4.30 - 4.40 Judges deliberations
4.40 - 5.00 Prizes
5.00 onwards Networking down the pub [Building to be vacated by 5.15 pm please]

Posters

Poster 1 Molecular dynamics simulations of dihydrofolate reductase from Thermotoga Maritima
Jiayun Pang - University of Birmingham
Poster 2 Glycine gating of plant NMDA-like receptors
David Huggins - University of Oxford
Poster 3 Secondary structure in carbohydrate based peptide mimetics
Christopher Baker - University of Oxford
Poster 4 Evaluation of structural similarity based on reduced dimensionality representations of protein structure
Biggi Albrecht - University of Oxford
Poster 5 Modelling the structure and mechanism of HIV-1 reverse transcriptase
Thanyada Rungrotemongkol - University of Bristol
Poster 6 Active binding site detection by flood docking a library of molecular fragments
Tamas Lengyel - University of Leeds
Poster 7 Aromatic hydroxylation by cytochrome P450 enzymes: model calculations of mechanism and substituent effects
Christine Bathelt - University of Bristol
Poster 8 Molecular modelling prediction of protein binding site flexibility
Ami Yang - University of Cambridge
Poster 9 Exploring protein-nucleic acid interactions at the atomic level
Jayshree Patel - University of Sheffield
Poster 10A rule-based approach for generating phylogenetic relationships between bacteria from the prediction of protein functional classes from sequence
Ali Al-Shahib - University of Glasgow

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